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Most recent tutorial recording for RNA-Seq Analysis

Description

This tutorial covers the process of handling bulk RNAseq data with command line tools.

Attendees will learn the structure of a “standard” bulk RNAseq analysis workflow and the names of commonly used tools to process the data. We will cover the setup and use of a command line MSI-developed analytical workflow to process a real RNAseq dataset. Quality control metrics and basic interpretation of experiment summaries are covered. A short command line introduction is provided. Differential gene expression analysis is not covered in this tutorial.

NOTE: Registrants from outside of the University of Minnesota will be able to attend and watch the tutorial, but will not be able to interactively complete tutorial exercises.

Prerequisites: None, but Linux command line experience is beneficial

This tutorial will cover:

  • Common commands for the Linux command line
  • Basic organization of files and directories on Linux systems
  • Workflow for bulk RNAseq data processing
  • Usage of an MSI-developed tool for bulk RNAseq analysis
  • Common quality control metrics for bulk RNAseq experiments

To be successful, you should have:

  • An active MSI account
  • Basic familiarity with the Linux command line
  • Knowledge of how to submit compute jobs on MSI systems
  • Basic understanding of genomics technologies
  • A laptop or computer to follow along with exercises (in-person attendees should bring their laptop with them)

If you are registering late and registration is closed, please email help@msi.umn.edu for assistance.

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Enroll Now - Select a section to enroll in

Section Title
RNA-Seq Analysis
Type
Classroom
Days
T
Time
10:00AM to 12:00PM
Dates
Apr 07, 2026
Campus
Twin Cities (US Central Time)
Building
Walter Library
Room
Room 575
Schedule and Location
Contact Hours
2.0
Delivery Options
Classroom  
Course Fee(s)
Course Fee $0.00

Section Details

This session will take place ONSITE in Walter 575.
Section Title
RNA-Seq Analysis
Type
Online, instructor led
Days
T
Time
10:00AM to 12:00PM
Dates
Apr 07, 2026
Campus
Online (US Central Time)
Schedule and Location
Contact Hours
2.0
Location
  • Online (US Central Time)
Delivery Options
Instructor Led Online  
Course Fee(s)
Course Fee $0.00

Section Details

This session will take place ONLINE at the scheduled time. A Zoom link will be sent out prior to the tutorial.
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